Package: wtest 3.2
wtest: The W-Test for Genetic Interactions Testing
Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.
Authors:
wtest_3.2.tar.gz
wtest_3.2.zip(r-4.5)wtest_3.2.zip(r-4.4)wtest_3.2.zip(r-4.3)
wtest_3.2.tgz(r-4.4-x86_64)wtest_3.2.tgz(r-4.4-arm64)wtest_3.2.tgz(r-4.3-x86_64)wtest_3.2.tgz(r-4.3-arm64)
wtest_3.2.tar.gz(r-4.5-noble)wtest_3.2.tar.gz(r-4.4-noble)
wtest_3.2.tgz(r-4.4-emscripten)wtest_3.2.tgz(r-4.3-emscripten)
wtest.pdf |wtest.html✨
wtest/json (API)
# Install 'wtest' in R: |
install.packages('wtest', repos = c('https://anotherruisun.r-universe.dev', 'https://cloud.r-project.org')) |
- CpG.pos - Position of CpG Sites for the methylation Data
- SNP.pos - Pseudo Position of SNPs for the genotype Data
- diabetes.geno - Genotype Data of Candidate Diabetes Genes
- genotype - Example Genotype Data
- methylation - Example Methylation Data
- phenotype1 - Phenotype of the diabetes.geno Data
- phenotype2 - Simulated Phenotype of the genotype-methylation Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:1a25c59025. Checks:OK: 4 NOTE: 5. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 06 2024 |
R-4.5-win-x86_64 | NOTE | Nov 06 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 06 2024 |
R-4.4-win-x86_64 | NOTE | Nov 06 2024 |
R-4.4-mac-x86_64 | NOTE | Nov 06 2024 |
R-4.4-mac-aarch64 | NOTE | Nov 06 2024 |
R-4.3-win-x86_64 | OK | Nov 06 2024 |
R-4.3-mac-x86_64 | OK | Nov 06 2024 |
R-4.3-mac-aarch64 | OK | Nov 06 2024 |
Exports:hfhf.snps.methmafmethylation.recodeodds.ratiow.diagnosisw.qqplotwtestwtest.highwtest.snps.meth
Dependencies:
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Position of CpG Sites for the methylation Data | CpG.pos |
Genotype Data of Candidate Diabetes Genes | diabetes.geno |
Example Genotype Data | genotype |
Patameter Estimation for W-test Probability Distribution | hf |
Parameter Estimation for W-test Probability Distribution in Gene-methylation Data | hf.snps.meth |
Minor Allele Frequency | maf |
Example Methylation Data | methylation |
Recode Methylation Data | methylation.recode |
Odds Ratio | odds.ratio |
Phenotype of the diabetes.geno Data | phenotype1 |
Simulated Phenotype of the genotype-methylation Data | phenotype2 |
Pseudo Position of SNPs for the genotype Data | SNP.pos |
W-test Probability Distribution Diagnostic Plot | w.diagnosis |
W P-values Diagnosis by Q-Q Plot | w.qqplot |
W-test | wtest |
W-test for High Order Interaction Analysis | wtest.high |
W-test for Gene-methylation Interaction Analysis | wtest.snps.meth |